Peptide Degradation at 60°C (dim=4)
ADVANTAGES0 · dim 4SolvSRK wins. At the comparison noise level, SolvSRK beats the best baseline by at least 10 percentage points of survival, or by at least 0.05 balanced score when survival is tied. Use SolvSRK for this class of problem. All verdicts →
4-state forced degradation kinetics of therapeutic peptide at elevated temperature. States: intact peptide, deamidated species, oxidized species, aggregates. Arrhenius-driven rates. Mild stiffness from aggregation nonlinearity. Envelope ID 27.
Problem definition
Manning et al. (2010) Pharm Res; Topp (2000) J Pharm Sci
Canonical RHS excerpt from the registered callable used for this benchmark cell. Expand it to verify the state equations; it is not a standalone runnable fixture.
Show canonical RHS excerpt
def _rhs_peptide_deg(t, y):
P, D, O, A = y[0], y[1], y[2], y[3]
P = max(P, 0.0)
D = max(D, 0.0)
O = max(O, 0.0)
A = max(A, 0.0)
r_deam = _K_DEAM * P * _PH_FACTOR
r_ox = _K_OX * P
r_agg_p = _K_AGG * P * P
r_agg_d = _K_DEAM_AGG * (D + O) * (D + O)
dP = -r_deam - r_ox - r_agg_p
dD = r_deam - _K_DEAM_AGG * D * (D + O)
dO = r_ox - _K_DEAM_AGG * O * (D + O)
dA = r_agg_p + r_agg_d
return np.array([dP, dD, dO, dA])- Parameters
- _K_AGG = 5e-05
- _K_DEAM = 0.0025
- _K_DEAM_AGG = 0.0001
- _K_OX = 0.001
- _PH_FACTOR = 1
- Initial condition
- y(0) = [10, 0, 0, 0]
- Horizon
- t ∈ [0, 720]
Canonical RHS excerpt captured from the same registered callable used for the published benchmark. Frozen closure values are summarized below; helper imports and solver settings are intentionally omitted.
Fingerprint
Spread: low
Default noise: low
Recommendation snapshot
Clean best: SolvSRK
Noisy best: SolvSRK
Coverage
14 solver arms · clean + 5 noise levels
Ranked on survival, precision, and speed
Versions & freeze
Methodology →- Freeze
- 2026-08-13
- libsolvsrk
- 2.3.0
- SciPy
- 1.14
- SUNDIALS
- CVODE (bundled backend)
20 seeds/cell default · 14 arms · TRL 4–5 · simulation-lab validated · this page: Peptide Degradation at 60°C (dim=4) (peptide-degradation-at-60-c-dim-4)
Governed SolvTune benchmark freeze; per-arm medians only. RHS definitions and raw trial rows are not published.
Self-reported by Resonix Labs · not independently verified
Results matrix
Pick an objective and a noise level to rank all arms on survival, median SCD, median nfev, and median wall time. Medians across seeds.
Objective
Best overall trade-off of survival, precision, and speed.
Noise level
| # | Solver | Survival | SCD | nfev | Wall | Score |
|---|---|---|---|---|---|---|
| 1 | SolvSRK | 100% | 14.9 | 4,357 | 30 ms | 0.974 |
| 2 | Vern9external | 100% | 12.8 | 226 | 2.54 s | 0.923 |
| 3 | SciPy RadauSciPy | 100% | 11.7 | 703 | 8 ms | 0.897 |
| 4 | Vern7external | 100% | 11.3 | 202 | 2.53 s | 0.889 |
| 5 | SciPy DOP853SciPy | 100% | 9.7 | 110 | <1 ms | 0.850 |
| 6 | CVODE Adamsexternal | 100% | 9.2 | 65 | 4 ms | 0.839 |
| 7 | Tsit5external | 100% | 9.1 | 180 | 466 ms | 0.836 |
| 8 | SciPy RK45SciPy | 100% | 8.8 | 194 | <1 ms | 0.828 |
| 9 | SciPy LSODASciPy | 100% | 8.7 | 105 | <1 ms | 0.827 |
| 10 | FBDFexternal | 100% | 8.1 | 200 | 3.19 s | 0.812 |
| 11 | SciPy RK23SciPy | 100% | 7.9 | 1,010 | 5 ms | 0.807 |
| 12 | CVODE BDFexternal | 100% | 7.3 | 126 | 5 ms | 0.793 |
| 13 | SciPy BDFSciPy | 100% | 7.2 | 209 | 4 ms | 0.791 |
| 14 | TRBDF2external | 100% | 6.0 | 2,120 | 3.27 s | 0.762 |
At Clean, best balanced arm is SolvSRK.
Values are medians across seeds, measured by Resonix Labs on Resonix hardware and not independently verified; nfev and wall are on reference lab hardware (indicative). Under injected noise only SolvSRK and the SciPy arms are run. How we measure accuracy → · Verification status →
Cite this page
Replace the access date. Pin the freeze ID and library versions when comparing against a later export. Cite it as what it is - a self-reported vendor benchmark, not an independently verified result. The note field says so; please keep it.
@misc{resonix_evidence_peptide_degradation_at_60_c_dim_4_2026,
title = {Resonix Evidence Portal: Peptide Degradation at 60°C (dim=4)},
author = {{Resonix Labs (Canada) Inc.}},
year = {2026},
howpublished = {\url{https://resonixusa.com/evidence/problems/peptide-degradation-at-60-c-dim-4}},
note = {Self-reported vendor benchmark; internally generated by Resonix Labs and not independently verified. Accessed YYYY-MM-DD. Freeze 2026-08-13; libsolvsrk 2.3.0; SciPy 1.14.}
}Related
TRL 4–5 · simulation-lab validated · 398 problems · 14 solver arms · clean + 5 noise levels
Freeze: 2026-08-13 · scipy 1.14 · libsolvsrk 2.3.0 · Methodology
Self-reported by Resonix Labs · not independently verified · Verification status